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  1. zarp zarp Public

    The Zavolab Automated RNA-seq Pipeline

    Python 36 4

  2. htsinfer htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-Seq data

    Python 15 22

  3. polyAsite_workflow polyAsite_workflow Public

    Pipeline for the processing of 3' end sequencing libraries

    Python 9 2

  4. PAQR_KAPAC PAQR_KAPAC Public

    scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site…

    Python 8 4

  5. Dockerfiles Dockerfiles Public

    Dockerfile repository of the Zavolan Lab

    Perl 8 2

  6. bindz-rbp bindz-rbp Public

    RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

    Roff 8

Repositories

Showing 10 of 49 repositories
  • nanoflowz Public

    This repository contains a set of workflows and tools for processing and analysis of ONT RNA long-read sequencing data

    zavolanlab/nanoflowz’s past year of commit activity
    Python 1 MIT 0 12 2 Updated Apr 20, 2026
  • zavolab_pyutils Public

    This repository contains python modules dedicated to various utilities for genomic data analysis, like library size normalization, annotation conversion etc

    zavolanlab/zavolab_pyutils’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 20, 2026
  • APA_localization Public

    This repository is dedicated to lab's projects related to the studying of subcellular localization of alternative polyadenylation (APA) isoforms.

    zavolanlab/APA_localization’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 16, 2026
  • TemperatureDependentCelegansAging_Spang Public

    This repository contains the computational workflows and downstream analysis notebooks related to the experiments on Temperature-Dependent C.elegans Aging conducted by the lab of Prof. Anne Spang.

    zavolanlab/TemperatureDependentCelegansAging_Spang’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 15, 2026
  • SeqMetrics Public

    Package to compute metrics over protein-coding sequences

    zavolanlab/SeqMetrics’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 10, 2026
  • mirflowz Public

    Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

    zavolanlab/mirflowz’s past year of commit activity
    Python 6 MIT 1 19 1 Updated Apr 4, 2026
  • CellType_PolyASite_Atlas Public

    This repository is dedicated to the update of PolyASite Atlas to v4.0 with cell-type-level quantification of PAS usage

    zavolanlab/CellType_PolyASite_Atlas’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Apr 1, 2026
  • ucsc_tracks Public

    This repository is dedicated to store the tracks for visualization in UCSC Genome Browser, from various studies

    zavolanlab/ucsc_tracks’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 10, 2026
  • zarp Public

    The Zavolab Automated RNA-seq Pipeline

    zavolanlab/zarp’s past year of commit activity
    Python 36 Apache-2.0 4 12 (1 issue needs help) 0 Updated Jan 29, 2026
  • primer_probe_design Public

    The repository contains the data, UCSC trackhub, and tools for PCR primer and probe design in the Zavolan lab

    zavolanlab/primer_probe_design’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 29, 2025

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